PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9238_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 22695.3 Da    PI: 4.0619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9238_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.5e-0816432855
         AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                r r++lg+f tae+Aa+a +aa  +l+g
  RrC9238_p1 16 RERIWLGSFETAEKAARAFDAALYCLRG 43
                59************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.734151IPR001471AP2/ERF domain
SMARTSM003802.1E-6657IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-111252IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-161252IPR001471AP2/ERF domain
CDDcd000181.25E-141853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDASPKYTDS SPTNSRERIW LGSFETAEKA ARAFDAALYC LRGPGARFNF PDNPPEIPGG  60
RSLTPQQIQV VASRFACEEV LPPQQQQQQE APSSPRGDKT EDGGGISARG DISGGSGGPT  120
SGQVGEDNNN HEDNSNDTTT YWPFLWEENH VVPTTSEEFG TFFMDDDSTN LYTQHQHQLS  180
SDSYYDGAYV VEDDLSHYNI NLWNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409772e-64AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898832e-64AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608662e-64AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115772e-64BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122432e-64BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026882e-64CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712924.11e-119PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5916e-91ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A0D3AKD71e-115A0A0D3AKD7_BRAOL; Uncharacterized protein
STRINGscaffold_602234.16e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-67ERF family protein